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LOC101246137 nuclear transcription factor Y subunit B-4-like [ Solanum lycopersicum (tomato) ]

Gene ID: 101246137, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101246137
Gene description
nuclear transcription factor Y subunit B-4-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101246137 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
4
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 5 NC_015442.3 (281607..288815)
102 previous assembly SL2.50 (GCF_000188115.3) 5 NC_015442.2 (281618..288916)

Chromosome 5 - NC_015442.3Genomic Context describing neighboring genes Neighboring gene putative late blight resistance protein homolog R1B-16 Neighboring gene uncharacterized LOC101250114 Neighboring gene nuclear transcription factor Y subunit B-6-like Neighboring gene nuclear transcription factor Y subunit B-6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit B-4-like; nuclear transcription factor Y subunit B-6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015442.3 Reference SL3.0 Primary Assembly

    Range
    281607..288815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010322269.3 → XP_010320571.1  nuclear transcription factor Y subunit B-4-like isoform X3

    UniProtKB/TrEMBL
    A0A3Q7G952
    Conserved Domains (2) summary
    pfam00808
    Location:55 → 116
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    pfam07830
    Location:21 → 63
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  2. XM_004239293.4 → XP_004239341.1  nuclear transcription factor Y subunit B-6-like isoform X2

    UniProtKB/TrEMBL
    A0A3Q7G952, A0A3Q7GCF6
    Conserved Domains (2) summary
    pfam00808
    Location:55 → 116
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    pfam07830
    Location:17 → 63
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain

  3. XM_004239294.4 → XP_004239342.1  nuclear transcription factor Y subunit B-6-like isoform X1

    UniProtKB/TrEMBL
    A0A3Q7G952
    Conserved Domains (2) summary
    pfam00808
    Location:60 → 121
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
    pfam07830
    Location:26 → 68
    PP2C_C; Protein serine/threonine phosphatase 2C, C-terminal domain
Nucleotide Protein
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