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LOC101245349 transcription factor bHLH30-like [ Solanum lycopersicum (tomato) ]

Gene ID: 101245349, updated on 1-Nov-2024

Summary

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Gene symbol
LOC101245349
Gene description
transcription factor bHLH30-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

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See LOC101245349 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 4 NC_090803.1 (5278364..5280416, complement)
103 previous assembly SL3.0 (GCF_000188115.4) 4 NC_015441.3 (4614573..4617210, complement)

Chromosome 4 - NC_090803.1Genomic Context describing neighboring genes Neighboring gene protein PELPK2-like Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 Neighboring gene kinase-interacting protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH30-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090803.1 Reference SLM_r2.1 Primary Assembly

    Range
    5278364..5280416 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004236649.5 → XP_004236697.2  transcription factor bHLH30-like

Nucleotide Protein
Heading Accession and Version

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