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ERF1 ethylene-responsive transcription factor 4-like [ Cucumis sativus (cucumber) ]

Gene ID: 101222924, updated on 14-Dec-2023

Summary

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Gene symbol
ERF1
Gene description
ethylene-responsive transcription factor 4-like
Locus tag
Csa_004057
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See ERF1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (29349705..29350445, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (27325255..27325995, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene protein FRIGIDA-ESSENTIAL 1 Neighboring gene transfer RNA aspartic acid (anticodon GUC) Neighboring gene protein DEHYDRATION-INDUCED 19 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor 4-like
Names
ethylene response factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280596.2 → NP_001267525.1  ethylene-responsive transcription factor 4-like

    See identical proteins and their annotated locations for NP_001267525.1

    Status: VALIDATED

    Source sequence(s)
    GDIL01002948
    UniProtKB/TrEMBL
    Q5S004
    Conserved Domains (1) summary
    smart00380
    Location:21 → 84
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    29349705..29350445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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