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GL3 transcription factor EGL1 [ Cucumis sativus (cucumber) ]

Gene ID: 101222463, updated on 14-Dec-2023

Summary

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Gene symbol
GL3
Gene description
transcription factor EGL1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See GL3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (351388..356060)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (351623..356399)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101222938 Neighboring gene transfer RNA lysine (anticodon UUU) Neighboring gene gibberellin 20-oxidase-like protein Neighboring gene rop guanine nucleotide exchange factor 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel loci fsd6.1 and Csgl3 regulate ultra-high fruit spine density in cucumber. Bo K, et al. Theor Appl Genet, 2019 Jan. PMID 30242492
  2. HECATE2 acts with GLABROUS3 and Tu to boost cytokinin biosynthesis and regulate cucumber fruit wart formation. Wang Z, et al. Plant Physiol, 2021 Nov 3. PMID 34618075, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HECATE2 acts with GLABROUS3 and Tu to boost cytokinin biosynthesis and regulate cucumber fruit wart formation.
    Title: HECATE2 acts with GLABROUS3 and Tu to boost cytokinin biosynthesis and regulate cucumber fruit wart formation.
  2. Fine mapping indicated that Csgl3 is the candidate gene at the fsd6.2 locus. This locus controls high fruit spine density in natural cucumbers
    Title: Novel loci fsd6.1 and Csgl3 regulate ultra-high fruit spine density in cucumber.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor EGL1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001305706.1 → NP_001292635.1  transcription factor EGL1

    See identical proteins and their annotated locations for NP_001292635.1

    Status: PROVISIONAL

    Source sequence(s)
    JN190488
    UniProtKB/TrEMBL
    A0A0A0KCZ7, I6N8K6
    Conserved Domains (3) summary
    smart00353
    Location:463 → 503
    HLH; helix loop helix domain
    pfam14215
    Location:15 → 197
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cl17210
    Location:456 → 579
    OSCP; ATP synthase delta (OSCP) subunit

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    351388..356060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011658037.2 → XP_011656339.1  transcription factor EGL1 isoform X1

    UniProtKB/TrEMBL
    A0A0A0KCZ7
    Conserved Domains (2) summary
    pfam14215
    Location:8 → 190
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
    cl00081
    Location:456 → 513
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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