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LOC101220747 BEL1-like homeodomain protein 1 [ Cucumis sativus (cucumber) ]

Gene ID: 101220747, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101220747
Gene description
BEL1-like homeodomain protein 1
Locus tag
Csa_003559
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101220747 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (21978744..21983069)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (20030037..20033925)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At1g08160 Neighboring gene serine/threonine-protein kinase Nek5 Neighboring gene E3 ubiquitin-protein ligase PUB23 Neighboring gene protein FAF-like, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BEL1-like homeodomain protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    21978744..21983069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031887552.1 → XP_031743412.1  BEL1-like homeodomain protein 1

    UniProtKB/TrEMBL
    A0A0A0KEF7
    Conserved Domains (2) summary
    pfam05920
    Location:410 → 449
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:194 → 334
    POX; Associated with HOX

  2. XM_011659291.2 → XP_011657593.1  BEL1-like homeodomain protein 1

    See identical proteins and their annotated locations for XP_011657593.1

    UniProtKB/TrEMBL
    A0A0A0KEF7
    Conserved Domains (2) summary
    pfam05920
    Location:410 → 449
    Homeobox_KN; Homeobox KN domain
    pfam07526
    Location:194 → 334
    POX; Associated with HOX
Nucleotide Protein
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