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LOC101219728 transcription factor bHLH18 [ Cucumis sativus (cucumber) ]

Gene ID: 101219728, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101219728
Gene description
transcription factor bHLH18
Locus tag
Csa_003114
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101219728 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (26373432..26375746, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (24348966..24351139, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene probable hexokinase-like 2 protein Neighboring gene transcription factor bHLH19 Neighboring gene uncharacterized LOC101205034 Neighboring gene COMPASS-like H3K4 histone methylase component WDR5A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    26373432..26375746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004143377.3 → XP_004143425.1  transcription factor bHLH18

    See identical proteins and their annotated locations for XP_004143425.1

    UniProtKB/TrEMBL
    A0A0A0KG27
    Conserved Domains (1) summary
    cl00081
    Location:149 → 221
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_031886734.1 → XP_031742594.1  transcription factor bHLH18

    UniProtKB/TrEMBL
    A0A0A0KG27
    Conserved Domains (1) summary
    cl00081
    Location:149 → 221
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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