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LOC101219601 protein YABBY 4 [ Cucumis sativus (cucumber) ]

Gene ID: 101219601, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101219601
Gene description
protein YABBY 4
Locus tag
Csa_009483
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101219601 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (2578902..2583422, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (2442977..2447411, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene probable xyloglucan galactosyltransferase GT19 Neighboring gene probable trehalose-phosphate phosphatase F Neighboring gene NAC domain-containing protein 26 Neighboring gene auxin-responsive protein SAUR32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in abaxial cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fruit development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polarity specification of adaxial/abaxial axis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of shoot apical meristem development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein YABBY 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    2578902..2583422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011652120.2 → XP_011650422.1  protein YABBY 4 isoform X1

    Conserved Domains (1) summary
    pfam04690
    Location:16 → 126
    YABBY; YABBY protein

  2. XM_004150599.3 → XP_004150647.1  protein YABBY 4 isoform X2

    See identical proteins and their annotated locations for XP_004150647.1

    UniProtKB/TrEMBL
    A0A0A0L1N8
    Conserved Domains (1) summary
    pfam04690
    Location:16 → 182
    YABBY; YABBY protein

  3. XM_031882866.1 → XP_031738726.1  protein YABBY 4 isoform X2

    UniProtKB/TrEMBL
    A0A0A0L1N8
    Conserved Domains (1) summary
    pfam04690
    Location:16 → 182
    YABBY; YABBY protein
Nucleotide Protein
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