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LOC101219473 AP2-like ethylene-responsive transcription factor AIL1 [ Cucumis sativus (cucumber) ]

Gene ID: 101219473, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101219473
Gene description
AP2-like ethylene-responsive transcription factor AIL1
Locus tag
Csa_005996
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101219473 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (7285638..7290091)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (7032205..7036086)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene omega-hydroxypalmitate O-feruloyl transferase Neighboring gene uncharacterized LOC116402241 Neighboring gene probable E3 ubiquitin-protein ligase ARI8 Neighboring gene phospholipase A(1) LCAT3 Neighboring gene protein PELOTA 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor AIL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    7285638..7290091
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004138933.3 → XP_004138981.1  AP2-like ethylene-responsive transcription factor AIL1

    See identical proteins and their annotated locations for XP_004138981.1

    UniProtKB/TrEMBL
    A0A0A0LKQ9
    Conserved Domains (1) summary
    smart00380
    Location:365 → 429
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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