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LOC101217039 auxin response factor 18 [ Cucumis sativus (cucumber) ]

Gene ID: 101217039, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101217039
Gene description
auxin response factor 18
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Also known as
ARF10b
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Genomic context

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See LOC101217039 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (22760351..22764311)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (20785735..20789698)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 Neighboring gene uncharacterized LOC116404323 Neighboring gene laccase-11 Neighboring gene CASP-like protein 5A2 Neighboring gene uncharacterized LOC116404698

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. Li Z, et al. BMC Genomics, 2011 Nov 2. PMID 22047402, Free PMC Article
  2. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. Guo S, et al. BMC Genomics, 2010 Jun 17. PMID 20565788, Free PMC Article
  3. The genome of the cucumber, Cucumis sativus L. Huang S, et al. Nat Genet, 2009 Dec. PMID 19881527
  4. An integrated genetic and cytogenetic map of the cucumber genome. Ren Y, et al. PLoS One, 2009 Jun 4. PMID 19495411, Free PMC Article
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 18
Names
auxin response factor 10b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308843.1 → NP_001295772.1  auxin response factor 18

    See identical proteins and their annotated locations for NP_001295772.1

    Status: PROVISIONAL

    Source sequence(s)
    KC843343
    UniProtKB/TrEMBL
    S5GDL3
    Conserved Domains (2) summary
    pfam02362
    Location:116 → 217
    B3; B3 DNA binding domain
    pfam06507
    Location:283 → 366
    Auxin_resp; Auxin response factor

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    22760351..22764311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031886495.1 → XP_031742355.1  auxin response factor 18 isoform X1

    UniProtKB/TrEMBL
    A0A0A0KID3
    Conserved Domains (2) summary
    pfam02362
    Location:120 → 221
    B3; B3 DNA binding domain
    pfam06507
    Location:287 → 370
    Auxin_resp; Auxin response factor

  2. XM_004143204.3 → XP_004143252.1  auxin response factor 18 isoform X1

    See identical proteins and their annotated locations for XP_004143252.1

    UniProtKB/TrEMBL
    A0A0A0KID3
    Conserved Domains (2) summary
    pfam02362
    Location:120 → 221
    B3; B3 DNA binding domain
    pfam06507
    Location:287 → 370
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

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