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LOC101216738 transcription factor PIF3 [ Cucumis sativus (cucumber) ]

Gene ID: 101216738, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101216738
Gene description
transcription factor PIF3
Locus tag
Csa_021334
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101216738 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (3724450..3732276)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (3510029..3517882)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101221073 Neighboring gene pentatricopeptide repeat-containing protein At1g71210, mitochondrial Neighboring gene transcription factor MYB8 Neighboring gene protein NRT1/ PTR FAMILY 4.5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor PIF3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    3724450..3732276
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011650583.2 → XP_011648885.1  transcription factor PIF3 isoform X1

    See identical proteins and their annotated locations for XP_011648885.1

    Conserved Domains (1) summary
    cd11445
    Location:472 → 534
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  2. XM_011650582.2 → XP_011648884.1  transcription factor PIF3 isoform X1

    See identical proteins and their annotated locations for XP_011648884.1

    Conserved Domains (1) summary
    cd11445
    Location:472 → 534
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  3. XM_031880882.1 → XP_031736742.1  transcription factor PIF3 isoform X2

    UniProtKB/TrEMBL
    A0A0A0LH16
    Conserved Domains (1) summary
    cd11445
    Location:450 → 512
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  4. XM_011650584.2 → XP_011648886.1  transcription factor PIF3 isoform X2

    See identical proteins and their annotated locations for XP_011648886.1

    UniProtKB/TrEMBL
    A0A0A0LH16
    Conserved Domains (1) summary
    cd11445
    Location:450 → 512
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  5. XM_011650585.2 → XP_011648887.1  transcription factor PIF3 isoform X2

    See identical proteins and their annotated locations for XP_011648887.1

    UniProtKB/TrEMBL
    A0A0A0LH16
    Conserved Domains (1) summary
    cd11445
    Location:450 → 512
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

  6. XM_031880883.1 → XP_031736743.1  transcription factor PIF3 isoform X3

    Conserved Domains (1) summary
    cd11445
    Location:384 → 446
    bHLH_AtPIF_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana phytochrome interacting factors (PIFs) and similar proteins

RNA

  1. XR_968643.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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