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LOC101216567 protein PHR1-LIKE 1 [ Cucumis sativus (cucumber) ]

Gene ID: 101216567, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101216567
Gene description
protein PHR1-LIKE 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101216567 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (30703695..30710362, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (27095742..27102304, complement)

Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g04760, chloroplastic Neighboring gene ankyrin repeat domain-containing protein 13B Neighboring gene kelch repeat-containing protein At3g27220 Neighboring gene pentatricopeptide repeat-containing protein At5g50990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHR1-LIKE 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    30703695..30710362 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004142496.3 → XP_004142544.1  protein PHR1-LIKE 1

    See identical proteins and their annotated locations for XP_004142544.1

    UniProtKB/TrEMBL
    A0A0A0LY82
    Conserved Domains (2) summary
    TIGR01557
    Location:230 → 284
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:315 → 360
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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