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LOC101216500 auxin response factor 18-like [ Cucumis sativus (cucumber) ]

Gene ID: 101216500, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101216500
Gene description
auxin response factor 18-like
Locus tag
Csa_020780
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Also known as
ARF10a
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Genomic context

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See LOC101216500 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (10156246..10160102, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (10069231..10073073, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene CASP-like protein 5A2 Neighboring gene serine/threonine-protein phosphatase 6 regulatory subunit 3 Neighboring gene UDP-xylose transporter 1 Neighboring gene uncharacterized LOC101216740

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 18-like
Names
auxin response factor 10a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001288596.1 → NP_001275525.1  auxin response factor 18-like

    See identical proteins and their annotated locations for NP_001275525.1

    Status: PROVISIONAL

    Source sequence(s)
    KC843342
    UniProtKB/TrEMBL
    S5G1J2
    Conserved Domains (2) summary
    pfam02362
    Location:112 → 213
    B3; B3 DNA binding domain
    pfam06507
    Location:281 → 364
    Auxin_resp; Auxin response factor

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    10156246..10160102 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011658005.2 → XP_011656307.1  auxin response factor 18-like isoform X1

    See identical proteins and their annotated locations for XP_011656307.1

    UniProtKB/TrEMBL
    S5G1J2
    Conserved Domains (2) summary
    pfam02362
    Location:112 → 213
    B3; B3 DNA binding domain
    pfam06507
    Location:281 → 364
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases