U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101216110 transcription factor bHLH49 [ Cucumis sativus (cucumber) ]

Gene ID: 101216110, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC101216110
Gene description
transcription factor bHLH49
Locus tag
Csa_004654
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101216110 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (14293723..14297647, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (3219223..3222947, complement)

Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116403907 Neighboring gene heat shock protein 90-5, chloroplastic Neighboring gene uncharacterized LOC116403908 Neighboring gene WPP domain-interacting tail-anchored protein 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
transcription factor bHLH49

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    14293723..14297647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031885073.1 → XP_031740933.1  transcription factor bHLH49

    UniProtKB/TrEMBL
    A0A0A0KLP9
    Conserved Domains (1) summary
    cd18919
    Location:337 → 422
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  2. XM_031885072.1 → XP_031740932.1  transcription factor bHLH49

    UniProtKB/TrEMBL
    A0A0A0KLP9
    Conserved Domains (1) summary
    cd18919
    Location:337 → 422
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  3. XM_031885071.1 → XP_031740931.1  transcription factor bHLH49

    UniProtKB/TrEMBL
    A0A0A0KLP9
    Conserved Domains (1) summary
    cd18919
    Location:337 → 422
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  4. XM_004149436.3 → XP_004149484.2  transcription factor bHLH49

    See identical proteins and their annotated locations for XP_004149484.2

    UniProtKB/TrEMBL
    A0A0A0KLP9
    Conserved Domains (1) summary
    cd18919
    Location:337 → 422
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  5. XM_031885074.1 → XP_031740934.1  transcription factor bHLH49

    UniProtKB/TrEMBL
    A0A0A0KLP9
    Conserved Domains (1) summary
    cd18919
    Location:337 → 422
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

RNA

  1. XR_004216449.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases