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LOC101215588 transcription factor bHLH79 [ Cucumis sativus (cucumber) ]

Gene ID: 101215588, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101215588
Gene description
transcription factor bHLH79
Locus tag
Csa_013268
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101215588 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (1286837..1290576, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (1260863..1264558, complement)

Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene germin-like protein subfamily T member 2 Neighboring gene uncharacterized LOC116401812 Neighboring gene uncharacterized LOC101215824 Neighboring gene uncharacterized LOC101216066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH79

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    1286837..1290576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004138092.3 → XP_004138140.1  transcription factor bHLH79

    See identical proteins and their annotated locations for XP_004138140.1

    UniProtKB/TrEMBL
    A0A0A0LS74
    Conserved Domains (1) summary
    smart00353
    Location:159 → 208
    HLH; helix loop helix domain
Nucleotide Protein
Heading Accession and Version

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