U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC101213813 nuclear transcription factor Y subunit C-2 [ Cucumis sativus (cucumber) ]

Gene ID: 101213813, updated on 14-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC101213813
Gene description
nuclear transcription factor Y subunit C-2
Locus tag
Csa_017325
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC101213813 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (3627080..3629649)
101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (3270392..3272700)

Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene UDP-glycosyltransferase 74F2 Neighboring gene UDP-glycosyltransferase 74F2 Neighboring gene dynamin-like protein ARC5 Neighboring gene uncharacterized LOC101220419

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
nuclear transcription factor Y subunit C-2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    3627080..3629649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031889066.1 → XP_031744926.1  nuclear transcription factor Y subunit C-2

    UniProtKB/TrEMBL
    A0A0A0K5U1
    Conserved Domains (1) summary
    COG5208
    Location:85 → 250
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  2. XM_011660455.2 → XP_011658757.1  nuclear transcription factor Y subunit C-2

    See identical proteins and their annotated locations for XP_011658757.1

    UniProtKB/TrEMBL
    A0A0A0K5U1
    Conserved Domains (1) summary
    COG5208
    Location:85 → 250
    HAP5; CCAAT-binding factor, subunit C [Transcription]

  3. XM_004136804.3 → XP_004136852.1  nuclear transcription factor Y subunit C-2

    See identical proteins and their annotated locations for XP_004136852.1

    UniProtKB/TrEMBL
    A0A0A0K5U1
    Conserved Domains (1) summary
    COG5208
    Location:85 → 250
    HAP5; CCAAT-binding factor, subunit C [Transcription]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases