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LOC101213503 B3 domain-containing transcription repressor VAL2 [ Cucumis sativus (cucumber) ]

Gene ID: 101213503, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101213503
Gene description
B3 domain-containing transcription repressor VAL2
Locus tag
Csa_001582
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101213503 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (28558205..28570841)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (27209346..27222496)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene vacuolar-sorting receptor 1 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase IRK Neighboring gene uncharacterized LOC116402789 Neighboring gene elongation factor P Neighboring gene probable serine/threonine-protein kinase PBL11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
B3 domain-containing transcription repressor VAL2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    28558205..28570841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031882137.1 → XP_031737997.1  B3 domain-containing transcription repressor VAL2 isoform X1

    Conserved Domains (2) summary
    cd10017
    Location:314 → 415
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam07496
    Location:592 → 634
    zf-CW; CW-type Zinc Finger

  2. XM_031882136.1 → XP_031737996.1  B3 domain-containing transcription repressor VAL2 isoform X1

    Conserved Domains (2) summary
    cd10017
    Location:314 → 415
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam07496
    Location:592 → 634
    zf-CW; CW-type Zinc Finger

  3. XM_011653529.2 → XP_011651831.1  B3 domain-containing transcription repressor VAL2 isoform X2

    See identical proteins and their annotated locations for XP_011651831.1

    UniProtKB/TrEMBL
    A0A0A0LCL4
    Conserved Domains (2) summary
    cd10017
    Location:314 → 415
    B3_DNA; Plant-specific B3-DNA binding domain
    pfam07496
    Location:586 → 628
    zf-CW; CW-type Zinc Finger
Nucleotide Protein
Heading Accession and Version

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