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LOC101213244 protein PHR1-LIKE 2 [ Cucumis sativus (cucumber) ]

Gene ID: 101213244, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101213244
Gene description
protein PHR1-LIKE 2
Locus tag
Csa_009909
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101213244 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (8675055..8679339, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (8495124..8498946, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene probable calcium-binding protein CML22 Neighboring gene V-type proton ATPase 16 kDa proteolipid subunit Neighboring gene 60S ribosomal protein L13a-2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein PHR1-LIKE 2
Names
myb family transcription factor APL

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    8675055..8679339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011652575.2 → XP_011650877.1  protein PHR1-LIKE 2 isoform X2

    Conserved Domains (2) summary
    TIGR01557
    Location:50 → 106
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:142 → 189
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_004133946.3 → XP_004133994.2  protein PHR1-LIKE 2 isoform X1

    See identical proteins and their annotated locations for XP_004133994.2

    UniProtKB/TrEMBL
    A0A0A0L435
    Conserved Domains (2) summary
    TIGR01557
    Location:50 → 106
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:147 → 192
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
Nucleotide Protein
Heading Accession and Version

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