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LOC101211039 chromatin accessibility complex protein 1 [ Cucumis sativus (cucumber) ]

Gene ID: 101211039, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101211039
Gene description
chromatin accessibility complex protein 1
Locus tag
Csa_023035
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101211039 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (14748849..14751786, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (14150179..14153123, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene protein transport protein Sec61 subunit beta Neighboring gene syntaxin-71 Neighboring gene DDB1- and CUL4-associated factor 8 Neighboring gene DNA repair protein RAD51 homolog 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA polymerase epsilon subunit 4; chromatin accessibility complex protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    14748849..14751786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004149491.3 → XP_004149539.2  chromatin accessibility complex protein 1 isoform X1

    See identical proteins and their annotated locations for XP_004149539.2

    UniProtKB/TrEMBL
    A0A0A0KCQ2
    Conserved Domains (1) summary
    pfam00808
    Location:125 → 188
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone

  2. XM_031888004.1 → XP_031743864.1  DNA polymerase epsilon subunit 4 isoform X2

    Conserved Domains (1) summary
    cl23735
    Location:125 → 184
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
Nucleotide Protein
Heading Accession and Version

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