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LOC101210085 myb family transcription factor PHL7 [ Cucumis sativus (cucumber) ]

Gene ID: 101210085, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101210085
Gene description
myb family transcription factor PHL7
Locus tag
Csa_001689
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101210085 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (32464168..32469556)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (31419293..31424679)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene ribosome production factor 1 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene 14 kDa zinc-binding protein Neighboring gene glycine-rich cell wall structural protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
myb family transcription factor PHL7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    32464168..32469556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004136554.3 → XP_004136602.1  myb family transcription factor PHL7 isoform X2

    See identical proteins and their annotated locations for XP_004136602.1

    UniProtKB/TrEMBL
    A0A0A0LF93
    Conserved Domains (2) summary
    TIGR01557
    Location:45 → 101
    myb_SHAQKYF; myb-like DNA-binding domain, SHAQKYF class
    pfam14379
    Location:130 → 176
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif

  2. XM_031881642.1 → XP_031737502.1  myb family transcription factor PHL7 isoform X4

    Conserved Domains (2) summary
    pfam14379
    Location:78 → 123
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    cl21498
    Location:18 → 48
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  3. XM_031881641.1 → XP_031737501.1  myb family transcription factor PHL7 isoform X1

    Conserved Domains (2) summary
    pfam14379
    Location:52 → 97
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    cl21498
    Location:1 → 22
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

  4. XM_011653841.2 → XP_011652143.2  myb family transcription factor PHL7 isoform X3

    Conserved Domains (2) summary
    pfam14379
    Location:97 → 142
    Myb_CC_LHEQLE; MYB-CC type transfactor, LHEQLE motif
    cl21498
    Location:37 → 67
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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