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WRKY14 probable WRKY transcription factor 15-like [ Cucumis sativus (cucumber) ]

Gene ID: 101209733, updated on 14-Dec-2023

Summary

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Gene symbol
WRKY14
Gene description
probable WRKY transcription factor 15-like
Locus tag
Csa_021834
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See WRKY14 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 2 NC_026656.2 (23904634..23906317)
101 previous assembly ASM407v2 (GCF_000004075.2) 2 NC_026656.1 (22286976..22288422)

Chromosome 2 - NC_026656.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105434696 Neighboring gene F-box protein SKIP2 Neighboring gene tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like Neighboring gene probable 2-oxoglutarate-dependent dioxygenase At3g50210

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide analysis of WRKY gene family in Cucumis sativus. Ling J, et al. BMC Genomics, 2011 Sep 28. PMID 21955985, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable WRKY transcription factor 15-like
Names
WRKY protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280734.1 → NP_001267663.1  probable WRKY transcription factor 15-like

    See identical proteins and their annotated locations for NP_001267663.1

    Status: PROVISIONAL

    Source sequence(s)
    GU984015
    UniProtKB/TrEMBL
    E7CEW4
    Conserved Domains (2) summary
    smart00774
    Location:221 → 278
    WRKY; DNA binding domain
    pfam10533
    Location:178 → 218
    Plant_zn_clust; Plant zinc cluster domain

RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026656.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    23904634..23906317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011650265.2 → XP_011648567.1  probable WRKY transcription factor 15-like isoform X1

    Conserved Domains (2) summary
    smart00774
    Location:222 → 279
    WRKY; DNA binding domain
    pfam10533
    Location:181 → 219
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein
Heading Accession and Version

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