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LOC101209438 putative transcription factor bHLH086 [ Cucumis sativus (cucumber) ]

Gene ID: 101209438, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101209438
Gene description
putative transcription factor bHLH086
Locus tag
Csa_008782
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101209438 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (18711175..18713884)
101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (15158958..15161501)

Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105435504 Neighboring gene uncharacterized LOC116403806 Neighboring gene pentatricopeptide repeat-containing protein At1g77360, mitochondrial Neighboring gene probable serine/threonine-protein kinase PBL7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor bHLH086

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    18711175..18713884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031885272.1 → XP_031741132.1  putative transcription factor bHLH086 isoform X2

    Conserved Domains (1) summary
    cl00081
    Location:188 → 220
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily

  2. XM_004140316.3 → XP_004140364.1  putative transcription factor bHLH086 isoform X1

    See identical proteins and their annotated locations for XP_004140364.1

    UniProtKB/TrEMBL
    A0A0A0KN55
    Conserved Domains (1) summary
    cd11454
    Location:188 → 250
    bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins
Nucleotide Protein
Heading Accession and Version

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