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LOC101208161 basic leucine zipper 23 [ Cucumis sativus (cucumber) ]

Gene ID: 101208161, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101208161
Gene description
basic leucine zipper 23
Locus tag
Csa_020486
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101208161 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (903390..906094)
101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (739953..742568)

Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene beta-galactosidase 13 Neighboring gene ubiquitin-conjugating enzyme E2 28 Neighboring gene WD-40 repeat-containing protein MSI2 Neighboring gene heavy metal-associated isoprenylated plant protein 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper 23
Names
DNA binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    903390..906094
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004144798.3 → XP_004144846.1  basic leucine zipper 23

    See identical proteins and their annotated locations for XP_004144846.1

    UniProtKB/TrEMBL
    A0A0A0K2J3
    Conserved Domains (2) summary
    smart00338
    Location:84 → 150
    BRLZ; basic region leucin zipper
    cd14686
    Location:91 → 144
    bZIP; coiled coil [structural motif]
Nucleotide Protein
Heading Accession and Version

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