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LOC101206434 AP2-like ethylene-responsive transcription factor At2g41710 [ Cucumis sativus (cucumber) ]

Gene ID: 101206434, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101206434
Gene description
AP2-like ethylene-responsive transcription factor At2g41710
Locus tag
Csa_001337
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101206434 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (33364014..33369254)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (32321912..32327111)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene RRP12-like protein Neighboring gene pentatricopeptide repeat-containing protein At2g41720 Neighboring gene heat stress transcription factor B-3 Neighboring gene putative disease resistance protein RGA3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AP2-like ethylene-responsive transcription factor At2g41710

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    33364014..33369254
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004136618.3 → XP_004136666.1  AP2-like ethylene-responsive transcription factor At2g41710

    See identical proteins and their annotated locations for XP_004136666.1

    UniProtKB/TrEMBL
    A0A0A0LCL8
    Conserved Domains (1) summary
    cl00033
    Location:74 → 144
    AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
Nucleotide Protein
Heading Accession and Version

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