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LOC101206054 homeobox protein knotted-1-like 7 [ Cucumis sativus (cucumber) ]

Gene ID: 101206054, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101206054
Gene description
homeobox protein knotted-1-like 7
Locus tag
Csa_000116
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101206054 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 5 NC_026659.2 (2116273..2120389, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 5 NC_026659.1 (5425245..5429057, complement)

Chromosome 5 - NC_026659.2Genomic Context describing neighboring genes Neighboring gene molybdenum cofactor sulfurase Neighboring gene bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase Neighboring gene ubiquitin carboxyl-terminal hydrolase MINDY-1 Neighboring gene agamous-like MADS-box protein AGL19

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026659.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    2116273..2120389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004143891.3 → XP_004143939.1  homeobox protein knotted-1-like 7

    See identical proteins and their annotated locations for XP_004143939.1

    UniProtKB/TrEMBL
    A0A0A0KKD3
    Conserved Domains (3) summary
    pfam03790
    Location:35 → 73
    KNOX1; KNOX1 domain
    pfam03791
    Location:97 → 147
    KNOX2; KNOX2 domain
    pfam05920
    Location:244 → 283
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein
Heading Accession and Version

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