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LOC101205974 transcription factor bHLH93 [ Cucumis sativus (cucumber) ]

Gene ID: 101205974, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101205974
Gene description
transcription factor bHLH93
Locus tag
Csa_003823
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101205974 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 6 NC_026660.2 (26485337..26487045, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 6 NC_026660.1 (24460933..24462606, complement)

Chromosome 6 - NC_026660.2Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC101221631 Neighboring gene probable beta-D-xylosidase 6 Neighboring gene protein BRICK 1 Neighboring gene ABC transporter G family member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH93

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026660.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    26485337..26487045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011659630.2 → XP_011657932.1  transcription factor bHLH93 isoform X1

    Conserved Domains (2) summary
    cd04873
    Location:267 → 308
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cd00083
    Location:173 → 219
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

  2. XM_004143491.3 → XP_004143539.2  transcription factor bHLH93 isoform X2

    See identical proteins and their annotated locations for XP_004143539.2

    UniProtKB/TrEMBL
    A0A0A0KG39
    Conserved Domains (1) summary
    cl00081
    Location:169 → 234
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
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