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LOC101205604 transcription factor bHLH110 [ Cucumis sativus (cucumber) ]

Gene ID: 101205604, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101205604
Gene description
transcription factor bHLH110
Locus tag
Csa_001641
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101205604 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (37108865..37112696, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (36041563..36045137, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene AAA-ATPase At3g50940 Neighboring gene bifunctional nuclease 1 Neighboring gene fatty alcohol:caffeoyl-CoA acyltransferase Neighboring gene AP-4 complex subunit mu Neighboring gene U6atac minor spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH110

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    37108865..37112696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011654129.2 → XP_011652431.1  transcription factor bHLH110 isoform X2

    Conserved Domains (1) summary
    smart00353
    Location:345 → 387
    HLH; helix loop helix domain

  2. XM_004147827.3 → XP_004147875.2  transcription factor bHLH110 isoform X1

    See identical proteins and their annotated locations for XP_004147875.2

    UniProtKB/TrEMBL
    A0A0A0LJ18
    Conserved Domains (1) summary
    smart00353
    Location:345 → 390
    HLH; helix loop helix domain

  3. XM_011654131.2 → XP_011652433.1  transcription factor bHLH110 isoform X3

    Conserved Domains (1) summary
    cd11393
    Location:309 → 359
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
Nucleotide Protein
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