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LOC101205393 ethylene-responsive transcription factor LEP [ Cucumis sativus (cucumber) ]

Gene ID: 101205393, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101205393
Gene description
ethylene-responsive transcription factor LEP
Locus tag
Csa_014961
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101205393 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 4 NC_026658.2 (1235237..1236300, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 4 NC_026658.1 (1213206..1213908, complement)

Chromosome 4 - NC_026658.2Genomic Context describing neighboring genes Neighboring gene potassium transporter 5 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC101206481 Neighboring gene indole-3-acetic acid-amido synthetase GH3.17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor LEP

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026658.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    1235237..1236300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004152279.3 → XP_004152327.1  ethylene-responsive transcription factor LEP

    See identical proteins and their annotated locations for XP_004152327.1

    UniProtKB/TrEMBL
    A0A0A0KYM7
    Conserved Domains (1) summary
    smart00380
    Location:36 → 96
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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