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LOC101205372 transcription factor MYC2 [ Cucumis sativus (cucumber) ]

Gene ID: 101205372, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101205372
Gene description
transcription factor MYC2
Locus tag
Csa_009708
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101205372 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (1295807..1298134)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (1162879..1165115)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene ubiquitin carboxyl-terminal hydrolase 20 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD8 Neighboring gene uncharacterized LOC116402546 Neighboring gene uncharacterized LOC101205131 Neighboring gene protein HAIKU1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor MYC2
Names
Transcription factor AtMYC2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    1295807..1298134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004148691.3 → XP_004148739.1  transcription factor MYC2

    See identical proteins and their annotated locations for XP_004148739.1

    UniProtKB/TrEMBL
    A0A0A0L3Z0
    Conserved Domains (2) summary
    cd00083
    Location:476 → 527
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    pfam14215
    Location:73 → 253
    bHLH-MYC_N; bHLH-MYC and R2R3-MYB transcription factors N-terminal
Nucleotide Protein
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