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LOC101204000 putative transcription factor bHLH107 [ Cucumis sativus (cucumber) ]

Gene ID: 101204000, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101204000
Gene description
putative transcription factor bHLH107
Locus tag
Csa_019773
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101204000 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (20481107..20483823)
101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (17178075..17180715)

Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene plant-specific TFIIB-related protein PTF2 Neighboring gene probable inactive dual specificity protein phosphatase-like At4g18593 Neighboring gene uncharacterized LOC101207857 Neighboring gene uncharacterized protein YNL011C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative transcription factor bHLH107

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    20481107..20483823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004149005.3 → XP_004149053.1  putative transcription factor bHLH107

    See identical proteins and their annotated locations for XP_004149053.1

    UniProtKB/TrEMBL
    A0A0A0LX88
    Conserved Domains (2) summary
    cd04873
    Location:151 → 222
    ACT_UUR-ACR-like; ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD
    cl00081
    Location:59 → 136
    bHLH_SF; basic Helix Loop Helix (bHLH) domain superfamily
Nucleotide Protein
Heading Accession and Version

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