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LOC101202980 transcription factor bHLH130 [ Cucumis sativus (cucumber) ]

Gene ID: 101202980, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101202980
Gene description
transcription factor bHLH130
Locus tag
Csa_016690
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101202980 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 7 NC_026661.2 (19779388..19782178)
101 previous assembly ASM407v2 (GCF_000004075.2) 7 NC_026661.1 (16559313..16562085)

Chromosome 7 - NC_026661.2Genomic Context describing neighboring genes Neighboring gene putative tRNA (cytidine(34)-2'-O)-methyltransferase Neighboring gene SURP and G-patch domain-containing protein 1-like protein Neighboring gene pathogenesis-related thaumatin-like protein 3.5 Neighboring gene cytochrome P450 705A12 Neighboring gene histone H3-like centromeric protein CSE4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH130

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026661.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    19779388..19782178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011661158.2 → XP_011659460.1  transcription factor bHLH130 isoform X1

    See identical proteins and their annotated locations for XP_011659460.1

    Conserved Domains (1) summary
    smart00353
    Location:355 → 405
    HLH; helix loop helix domain

  2. XM_031889302.1 → XP_031745162.1  transcription factor bHLH130 isoform X3

    Conserved Domains (1) summary
    cd11393
    Location:354 → 405
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins

  3. XM_031889301.1 → XP_031745161.1  transcription factor bHLH130 isoform X2

    UniProtKB/TrEMBL
    A0A0A0K9U6
    Conserved Domains (1) summary
    cd11393
    Location:353 → 405
    bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
Nucleotide Protein
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