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LOC101202887 ethylene-responsive transcription factor ERF039 [ Cucumis sativus (cucumber) ]

Gene ID: 101202887, updated on 14-Dec-2023

Summary

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Gene symbol
LOC101202887
Gene description
ethylene-responsive transcription factor ERF039
Locus tag
Csa_009791
Gene type
protein coding
RefSeq status
MODEL
Organism
Cucumis sativus
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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Genomic context

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See LOC101202887 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Cucumber_9930_V3 (GCF_000004075.3) 3 NC_026657.2 (6659518..6660521, complement)
101 previous assembly ASM407v2 (GCF_000004075.2) 3 NC_026657.1 (6475989..6476826, complement)

Chromosome 3 - NC_026657.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101223156 Neighboring gene E3 ubiquitin-protein ligase BRE1-like 1 Neighboring gene hypothetical protein Neighboring gene putative uncharacterized protein DDB_G0270496

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor ERF039

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cucumber_9930_V3 Primary Assembly

Genomic

  1. NC_026657.2 Reference Cucumber_9930_V3 Primary Assembly

    Range
    6659518..6660521 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004134242.3 → XP_004134290.1  ethylene-responsive transcription factor ERF039

    See identical proteins and their annotated locations for XP_004134290.1

    UniProtKB/TrEMBL
    A0A0A0L8C6
    Conserved Domains (1) summary
    smart00380
    Location:52 → 110
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein
Heading Accession and Version

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