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rad50 RAD50 homolog, double strand break repair protein [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101172011, updated on 8-Mar-2024

Summary

Gene symbol
rad50
Gene description
RAD50 homolog, double strand break repair protein
See related
EnsemblRapid:ENSORLG00000001678
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
Orthologs
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Genomic context

See rad50 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
28
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 14 NC_019872.2 (7349019..7377343, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) 14 NC_019872.1 (8037765..8066049, complement)

Chromosome 14 - NC_019872.2Genomic Context describing neighboring genes Neighboring gene POU class 4 homeobox 3 Neighboring gene uncharacterized LOC100216003 Neighboring gene dopamine receptor D1b Neighboring gene uncharacterized LOC111948634

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
PubMed 
enables G-quadruplex DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
DNA repair protein RAD50
Names
RAD50 double strand break repair protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019872.2 Reference ASM223467v1 Primary Assembly

    Range
    7349019..7377343 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004076132.4XP_004076180.1  DNA repair protein RAD50

    UniProtKB/TrEMBL
    A0A3B3HZB0, A0A3P9LDV7
    Related
    ENSORLP00000037867.1, ENSORLT00000032367.2
    Conserved Domains (3) summary
    TIGR00606
    Location:21307
    rad50; rad50
    cd03240
    Location:11951297
    ABC_Rad50; ATP-binding cassette domain of Rad50
    pfam04423
    Location:659709
    Rad50_zn_hook; Rad50 zinc hook motif