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ALMS1 ALMS1 centrosome and basal body associated protein [ Felis catus (domestic cat) ]

Gene ID: 101098372, updated on 17-Aug-2024

Summary

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Official Symbol
ALMS1
Official Full Name
ALMS1 centrosome and basal body associated protein
Primary source
VGNC:VGNC:82432
See related
EnsemblRapid:ENSFCTG00005019637
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See ALMS1 in Genome Data Viewer
Location:
chromosome: A3
Exon count:
24
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) A3 NC_058370.1 (89752534..89976063)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) A3 NC_018725.3 (92291204..92520581)

Chromosome A3 - NC_058370.1Genomic Context describing neighboring genes Neighboring gene F-box protein 41 Neighboring gene early growth response 4 Neighboring gene single-stranded DNA-binding protein, mitochondrial-like Neighboring gene uncharacterized LOC111559835 Neighboring gene TP53RK binding protein Neighboring gene N-acetyltransferase 8 (putative)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deleterious mutation in the ALMS1 gene in a naturally occurring model of hypertrophic cardiomyopathy in the Sphynx cat. Meurs KM, et al. Orphanet J Rare Dis, 2021 Feb 27. PMID 33639992, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HCM-associated ALMS1 variant: Allele drop-out and frequency in Italian Sphynx cats.
    Title: HCM-associated ALMS1 variant: Allele drop-out and frequency in Italian Sphynx cats.
  2. A deleterious mutation in the ALMS1 gene in a naturally occurring model of hypertrophic cardiomyopathy in the Sphynx cat.
    Title: A deleterious mutation in the ALMS1 gene in a naturally occurring model of hypertrophic cardiomyopathy in the Sphynx cat.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of centriole replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centriole IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Alstrom syndrome protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058370.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    89752534..89976063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045054413.1 → XP_044910348.1  Alstrom syndrome protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1692 → 1738
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3574 → 3798
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  2. XM_045054405.1 → XP_044910340.1  Alstrom syndrome protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1692 → 1738
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3574 → 3798
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  3. XM_045054402.1 → XP_044910337.1  Alstrom syndrome protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1692 → 1738
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3574 → 3798
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  4. XM_045054404.1 → XP_044910339.1  Alstrom syndrome protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1642 → 1688
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3524 → 3748
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  5. XM_045054407.1 → XP_044910342.1  Alstrom syndrome protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1555 → 1601
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3437 → 3661
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  6. XM_045054403.1 → XP_044910338.1  Alstrom syndrome protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Related
    ENSFCTP00005042518.1, ENSFCTT00005057890.1
    Conserved Domains (3) summary
    pfam17380
    Location:4594 → 4699
    DUF5401; Family of unknown function (DUF5401)
    pfam18727
    Location:1692 → 1738
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3574 → 3798
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  7. XM_045054406.1 → XP_044910341.1  Alstrom syndrome protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A5F5XGW4
    Conserved Domains (2) summary
    pfam18727
    Location:1605 → 1651
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3487 → 3711
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  8. XM_045054408.1 → XP_044910343.1  Alstrom syndrome protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A5F5XDW8
    Related
    ENSFCTP00005041957.1, ENSFCTT00005057085.1
    Conserved Domains (2) summary
    pfam18727
    Location:1350 → 1396
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3232 → 3456
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  9. XM_045054409.1 → XP_044910344.1  Alstrom syndrome protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A5F5XDW8
    Related
    ENSFCTP00005041631.1, ENSFCTT00005056572.1
    Conserved Domains (2) summary
    pfam18727
    Location:1196 → 1242
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:3078 → 3302
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  10. XM_045054410.1 → XP_044910345.1  Alstrom syndrome protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A5F5XDW8
    Related
    ENSFCTP00005042131.1, ENSFCTT00005057353.1
    Conserved Domains (2) summary
    pfam18727
    Location:1017 → 1063
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:2899 → 3123
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

  11. XM_045054412.1 → XP_044910347.1  Alstrom syndrome protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A5F5XDW8
    Conserved Domains (2) summary
    pfam18727
    Location:967 → 1013
    ALMS_repeat; Alstrom syndrome repeat
    cl10017
    Location:2849 → 3073
    Tubulin_FtsZ_Cetz-like; Tubulin protein family of FtsZ and CetZ-like

RNA

  1. XR_006595668.1 RNA Sequence

Nucleotide Protein
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