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ALX1 ALX homeobox 1 [ Felis catus (domestic cat) ]

Gene ID: 101095349, updated on 17-Aug-2024

Summary

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Official Symbol
ALX1
Official Full Name
ALX homeobox 1
Primary source
VGNC:VGNC:83488
See related
EnsemblRapid:ENSFCTG00005009742
Gene type
protein coding
RefSeq status
MODEL
Organism
Felis catus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis
Orthologs
human mouse all
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Genomic context

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See ALX1 in Genome Data Viewer
Location:
chromosome: B4
Exon count:
5
Annotation release Status Assembly Chr Location
105 current F.catus_Fca126_mat1.0 (GCF_018350175.1) B4 NC_058374.1 (107851193..107872185)
104 previous assembly Felis_catus_9.0 (GCF_000181335.3) B4 NC_018729.3 (110084656..110105392)

Chromosome B4 - NC_058374.1Genomic Context describing neighboring genes Neighboring gene tetraspanin 19 Neighboring gene leucine rich repeats and IQ motif containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene Ras association domain family member 9 Neighboring gene neurotensin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryonic skeletal system morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ALX homeobox protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Felis catus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference F.catus_Fca126_mat1.0 Primary Assembly

Genomic

  1. NC_058374.1 Reference F.catus_Fca126_mat1.0 Primary Assembly

    Range
    107851193..107872185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045062122.1 → XP_044918057.1  ALX homeobox protein 1

    UniProtKB/TrEMBL
    A0A2I2UIK3
    Conserved Domains (2) summary
    pfam00046
    Location:135 → 189
    Homeobox; Homeobox domain
    pfam03826
    Location:302 → 320
    OAR; OAR domain

  2. XM_003989090.5 → XP_003989139.1  ALX homeobox protein 1

    UniProtKB/TrEMBL
    A0A2I2UIK3
    Related
    ENSFCTP00005017652.1, ENSFCTT00005027189.1
    Conserved Domains (2) summary
    pfam00046
    Location:135 → 189
    Homeobox; Homeobox domain
    pfam03826
    Location:302 → 320
    OAR; OAR domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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