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LOC101055567 calmodulin-binding transcription factor SR2 [ Solanum lycopersicum (tomato) ]

Gene ID: 101055567, updated on 1-Nov-2024

Summary

Gene symbol
LOC101055567
Gene description
calmodulin-binding transcription factor SR2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
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Genomic context

See LOC101055567 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_09 current SLM_r2.1 (GCF_036512215.1) 12 NC_090811.1 (42239842..42264743)
103 previous assembly SL3.0 (GCF_000188115.4) 12 NC_015449.3 (41362886..41419652)

Chromosome 12 - NC_090811.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138340372 Neighboring gene uncharacterized LOC104645046 Neighboring gene uncharacterized LOC138340738 Neighboring gene uncharacterized mitochondrial protein AtMg00240-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
calmodulin-binding transcription factor SR2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001279201.1NP_001266130.1  calmodulin-binding transcription factor SR2

    See identical proteins and their annotated locations for NP_001266130.1

    Status: PROVISIONAL

    Source sequence(s)
    JN566047
    UniProtKB/TrEMBL
    H8ZRY2
    Conserved Domains (6) summary
    COG0666
    Location:547627
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:583654
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:363446
    TIG; IPT/TIG domain
    pfam03859
    Location:14128
    CG-1; CG-1 domain
    pfam13637
    Location:596654
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:595632
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036512215.1-RS_2024_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SLM_r2.1 Primary Assembly

Genomic

  1. NC_090811.1 Reference SLM_r2.1 Primary Assembly

    Range
    42239842..42264743
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069291809.1XP_069147910.1  calmodulin-binding transcription factor SR2 isoform X1

  2. XM_069291811.1XP_069147912.1  calmodulin-binding transcription factor SR2 isoform X2

  3. XM_069291813.1XP_069147914.1  calmodulin-binding transcription factor SR2 isoform X3

  4. XM_010315853.4XP_010314155.1  calmodulin-binding transcription factor SR2 isoform X1

    UniProtKB/TrEMBL
    K4DE13
    Conserved Domains (7) summary
    smart00015
    Location:840860
    IQ; Calmodulin-binding motif
    COG0666
    Location:591671
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    cd00204
    Location:627698
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam01833
    Location:407490
    TIG; IPT/TIG domain
    pfam03859
    Location:14128
    CG-1; CG-1 domain
    pfam13637
    Location:640698
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:639676
    ANK; ANK repeat [structural motif]
  5. XM_069291810.1XP_069147911.1  calmodulin-binding transcription factor SR2 isoform X2

  6. XM_069291812.1XP_069147913.1  calmodulin-binding transcription factor SR2 isoform X3

RNA

  1. XR_738803.4 RNA Sequence

  2. XR_011213068.1 RNA Sequence