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LINC00571 long intergenic non-protein coding RNA 571 [ Homo sapiens (human) ]

Gene ID: 100874188, updated on 17-Sep-2024

Summary

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Official Symbol
LINC00571provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 571provided by HGNC
Primary source
HGNC:HGNC:43721
See related
Ensembl:ENSG00000223685 AllianceGenome:HGNC:43721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 1.2), kidney (RPKM 0.4) and 14 other tissues See more
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Genomic context

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See LINC00571 in Genome Data Viewer
Location:
13q13.3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (38050817..38143232, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (37270427..37362847, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (38624954..38717369, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene transient receptor potential cation channel subfamily C member 4 Neighboring gene uncharacterized LOC124903160 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38488805-38489357 Neighboring gene long intergenic non-protein coding RNA 2334 Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 9 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5272 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7595 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:38924325-38924539 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:38938261-38938769 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5273 Neighboring gene ubiquitin fold modifier 1 Neighboring gene uncharacterized LOC105370167 Neighboring gene long intergenic non-protein coding RNA 437

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al. Proc Natl Acad Sci U S A, 2000 Mar 28. PMID 10737800, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_047500.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL137245, BM023585
    Related
    ENST00000434565.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    38050817..38143232 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    37270427..37362847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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