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ASIP agouti signaling protein [ Capra hircus (goat) ]

Gene ID: 100860915, updated on 8-Mar-2024

Summary

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Gene symbol
ASIP
Gene description
agouti signaling protein
See related
EnsemblRapid:ENSCHIG00000014323
Gene type
protein coding
RefSeq status
MODEL
Organism
Capra hircus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Capra
Also known as
agouti
Orthologs
human mouse all
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Genomic context

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See ASIP in Genome Data Viewer
Location:
chromosome: 13
Exon count:
5
Annotation release Status Assembly Chr Location
102 current ASM170441v1 (GCF_001704415.1) 13 NC_030820.1 (63228709..63249542)
101 previous assembly CHIR_1.0 (GCF_000317765.1) 13 NC_022305.1 (61693104..61698483)

Chromosome 13 - NC_030820.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 115 pseudogene Neighboring gene uncharacterized LOC102190531 Neighboring gene adenosylhomocysteinase Neighboring gene itchy E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Polymorphism of the goat agouti signaling protein gene and its relationship with coat color in Italian and Spanish breeds. Badaoui B, et al. Biochem Genet, 2011 Aug. PMID 21373989
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables melanocortin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables neuropeptide hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hormone-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in melanosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of melanin biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agouti-signaling protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capra hircus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM170441v1 Primary Assembly

Genomic

  1. NC_030820.1 Reference ASM170441v1 Primary Assembly

    Range
    63228709..63249542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018057736.1 → XP_017913225.1  agouti-signaling protein

    UniProtKB/TrEMBL
    A0A0S2VHX5, B2KNR1
    Related
    ENSCHIP00000012632.1, ENSCHIT00000020423.2

  2. XM_018057735.1 → XP_017913224.1  agouti-signaling protein

    UniProtKB/TrEMBL
    A0A0S2VHX5, B2KNR1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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