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LOC100846624 homeobox protein knotted-1-like 13 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100846624, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100846624
Gene description
homeobox protein knotted-1-like 13
Locus tag
BRADI_3g19927v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100846624 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 3 NC_016133.3 (18967902..18973657)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 3 NC_016133.2 (18948957..18954703)

Chromosome 3 - NC_016133.3Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic Neighboring gene uncharacterized LOC104584086 Neighboring gene uncharacterized LOC112271789 Neighboring gene uncharacterized LOC112271788 Neighboring gene uncharacterized LOC112271756

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016133.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    18967902..18973657
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010236253.3 → XP_010234555.2  homeobox protein knotted-1-like 13 isoform X1

    UniProtKB/TrEMBL
    I1I2N3
    Conserved Domains (4) summary
    pfam03789
    Location:263 → 284
    ELK; ELK domain
    pfam03790
    Location:101 → 138
    KNOX1; KNOX1 domain
    pfam03791
    Location:156 → 206
    KNOX2; KNOX2 domain
    pfam05920
    Location:303 → 342
    Homeobox_KN; Homeobox KN domain

  2. XM_010236254.3 → XP_010234556.2  homeobox protein knotted-1-like 13 isoform X3

    UniProtKB/TrEMBL
    I1I2N0
    Conserved Domains (4) summary
    pfam03789
    Location:263 → 284
    ELK; ELK domain
    pfam03790
    Location:101 → 138
    KNOX1; KNOX1 domain
    pfam03791
    Location:156 → 206
    KNOX2; KNOX2 domain
    pfam05920
    Location:303 → 342
    Homeobox_KN; Homeobox KN domain

  3. XM_003573619.4 → XP_003573667.3  homeobox protein knotted-1-like 13 isoform X2

    UniProtKB/TrEMBL
    I1I2N2
    Conserved Domains (4) summary
    pfam03789
    Location:263 → 284
    ELK; ELK domain
    pfam03790
    Location:101 → 138
    KNOX1; KNOX1 domain
    pfam03791
    Location:156 → 206
    KNOX2; KNOX2 domain
    pfam05920
    Location:303 → 342
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein Strain
Heading Accession and Version

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