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LOC100841919 calmodulin-binding transcription activator CBT [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100841919, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100841919
Gene description
calmodulin-binding transcription activator CBT
Locus tag
BRADI_1g27170v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100841919 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (22276983..22285965, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (22277720..22286679, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene GTP-binding protein YPTM2 Neighboring gene GTP-binding protein YPTM2 Neighboring gene ubiquinol-cytochrome-c reductase complex assembly factor 1 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP20-2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calmodulin-binding transcription activator CBT

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    22276983..22285965 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003563038.4 → XP_003563086.1  calmodulin-binding transcription activator CBT

    UniProtKB/TrEMBL
    I1GUA4
    Conserved Domains (5) summary
    smart00015
    Location:781 → 802
    IQ; Calmodulin-binding motif
    cd00204
    Location:541 → 651
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam03859
    Location:32 → 146
    CG-1; CG-1 domain
    pfam12796
    Location:564 → 655
    Ank_2; Ankyrin repeats (3 copies)
    sd00045
    Location:560 → 590
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

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