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LOC100841070 zinc finger CCCH domain-containing protein 66 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100841070, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100841070
Gene description
zinc finger CCCH domain-containing protein 66
Locus tag
BRADI_4g08050v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100841070 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (7027083..7034776)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (7022679..7030337)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene chloroplast stem-loop binding protein of 41 kDa b, chloroplastic Neighboring gene beta-glucosidase 38 Neighboring gene uncharacterized LOC112272514 Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene 15-cis-zeta-carotene isomerase, chloroplastic Neighboring gene microRNA MIR5181b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 66

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    7027083..7034776
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010238991.3 → XP_010237293.1  zinc finger CCCH domain-containing protein 66 isoform X1

    UniProtKB/TrEMBL
    A0A0Q3IKS4
    Conserved Domains (1) summary
    pfam00642
    Location:102 → 127
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_003576589.4 → XP_003576637.1  zinc finger CCCH domain-containing protein 66 isoform X2

    UniProtKB/TrEMBL
    I1IIN5
    Conserved Domains (1) summary
    pfam00642
    Location:99 → 124
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein Strain
Heading Accession and Version

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