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LOC100838968 trihelix transcription factor GTL1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100838968, updated on 6-Apr-2023

Summary

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Gene symbol
LOC100838968
Gene description
trihelix transcription factor GTL1
Locus tag
BRADI_5g17150v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100838968 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (20549181..20553658, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (20495553..20499948, complement)

Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene F-box/kelch-repeat protein At3g23880 Neighboring gene uncharacterized LOC100838662 Neighboring gene sphingoid long-chain bases kinase 1 Neighboring gene homeobox-leucine zipper protein HOX22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
trihelix transcription factor GTL1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    20549181..20553658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010241888.3 → XP_010240190.1  trihelix transcription factor GTL1 isoform X1

    UniProtKB/TrEMBL
    I1J064
    Conserved Domains (2) summary
    cd12203
    Location:497 → 562
    GT1; GT1, myb-like, SANT family
    pfam10211
    Location:305 → 351
    Ax_dynein_light; Axonemal dynein light chain

  2. XM_010241889.3 → XP_010240191.1  trihelix transcription factor GTL1 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3EBV2
    Conserved Domains (2) summary
    cd12203
    Location:497 → 562
    GT1; GT1, myb-like, SANT family
    pfam10211
    Location:305 → 351
    Ax_dynein_light; Axonemal dynein light chain
Nucleotide Protein Strain
Heading Accession and Version

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