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LOC100837321 transcription factor BHLH089 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100837321, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100837321
Gene description
transcription factor BHLH089
Locus tag
BRADI_4g34350v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100837321 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (39897823..39900142, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (40080142..40082432, complement)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene auxin-induced in root cultures protein 12 Neighboring gene 60S ribosomal protein L32-1 Neighboring gene 60S ribosomal protein L32-1 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP15-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor BHLH089

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    39897823..39900142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003578323.4 → XP_003578371.1  transcription factor BHLH089 isoform X1

    UniProtKB/TrEMBL
    I1IRH9
    Conserved Domains (1) summary
    smart00353
    Location:189 → 238
    HLH; helix loop helix domain

  2. XM_024455180.1 → XP_024310948.1  transcription factor BHLH089 isoform X2

    Conserved Domains (2) summary
    smart00353
    Location:189 → 238
    HLH; helix loop helix domain
    cl28310
    Location:63 → 197
    Rho; Transcription termination factor Rho [Transcription]
Nucleotide Protein Strain
Heading Accession and Version

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