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LOC100836677 protein tesmin/TSO1-like CXC 2 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100836677, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100836677
Gene description
protein tesmin/TSO1-like CXC 2
Locus tag
BRADI_1g55710v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100836677 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (54407324..54412591)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (54479999..54485290)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100837642 Neighboring gene uncharacterized LOC100837953 Neighboring gene leucine-rich repeat extensin-like protein 6 Neighboring gene small nucleolar RNA U3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein tesmin/TSO1-like CXC 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    54407324..54412591
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003557442.4 → XP_003557490.1  protein tesmin/TSO1-like CXC 2

    UniProtKB/TrEMBL
    A0A2K2DRM4, I1H364
    Conserved Domains (1) summary
    pfam03638
    Location:474 → 511
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain
Nucleotide Protein Strain
Heading Accession and Version

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