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LOC100835800 heat stress transcription factor A-2b [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100835800, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100835800
Gene description
heat stress transcription factor A-2b
Locus tag
BRADI_1g55630v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100835800 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (54335705..54339344, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (54408414..54412047, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene low molecular mass early light-inducible protein HV90, chloroplastic Neighboring gene high molecular mass early light-inducible protein HV58, chloroplastic Neighboring gene ETO1-like protein 1 Neighboring gene protein LIFEGUARD 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor A-2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    54335705..54339344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010229991.3 → XP_010228293.1  heat stress transcription factor A-2b

    See identical proteins and their annotated locations for XP_010228293.1

    UniProtKB/TrEMBL
    I1H355
    Conserved Domains (1) summary
    smart00415
    Location:51 → 144
    HSF; heat shock factor

  2. XM_010229990.3 → XP_010228292.1  heat stress transcription factor A-2b

    See identical proteins and their annotated locations for XP_010228292.1

    UniProtKB/TrEMBL
    I1H355
    Conserved Domains (1) summary
    smart00415
    Location:51 → 144
    HSF; heat shock factor

  3. XM_024457428.1 → XP_024313196.1  heat stress transcription factor A-2b

    UniProtKB/TrEMBL
    I1H355
    Conserved Domains (1) summary
    smart00415
    Location:51 → 144
    HSF; heat shock factor
Nucleotide Protein Strain
Heading Accession and Version

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