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LOC100834608 ethylene-responsive transcription factor RAP2-3 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100834608, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100834608
Gene description
ethylene-responsive transcription factor RAP2-3
Locus tag
BRADI_2g27920v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100834608 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 2 NC_016132.3 (26960740..26962022, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 2 NC_016132.2 (26953900..26955089, complement)

Chromosome 2 - NC_016132.3Genomic Context describing neighboring genes Neighboring gene apidaecins type 14-like Neighboring gene uncharacterized LOC104582699 Neighboring gene pectinesterase Neighboring gene RING-H2 finger protein ATL39

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale collection and analysis of full-length cDNAs from Brachypodium distachyon and integration with Pooideae sequence resources. Mochida K, et al. PLoS One, 2013. PMID 24130698, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ethylene-activated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ethylene-responsive transcription factor RAP2-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016132.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    26960740..26962022 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003568573.4 → XP_003568621.1  ethylene-responsive transcription factor RAP2-3

    UniProtKB/TrEMBL
    I1HK81
    Conserved Domains (1) summary
    smart00380
    Location:39 → 96
    AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
Nucleotide Protein Strain
Heading Accession and Version

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