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LOC100833617 zinc finger CCCH domain-containing protein 65 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100833617, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100833617
Gene description
zinc finger CCCH domain-containing protein 65
Locus tag
BRADI_4g39137v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100833617 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 4 NC_016134.3 (43739331..43745465)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 4 NC_016134.2 (43921531..43927683)

Chromosome 4 - NC_016134.3Genomic Context describing neighboring genes Neighboring gene DNA-(apurinic or apyrimidinic site) lyase Neighboring gene lysine-specific demethylase JMJ705 Neighboring gene cystinosin homolog Neighboring gene GDSL esterase/lipase EXL3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger CCCH domain-containing protein 65

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016134.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    43739331..43745465
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010240258.3 → XP_010238560.1  zinc finger CCCH domain-containing protein 65 isoform X1

    Conserved Domains (2) summary
    COG5152
    Location:173 → 310
    COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
    pfam00642
    Location:442 → 468
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  2. XM_014903254.2 → XP_014758740.1  zinc finger CCCH domain-containing protein 65 isoform X2

    UniProtKB/TrEMBL
    A0A0Q3HDZ9
    Conserved Domains (1) summary
    pfam00642
    Location:437 → 463
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

  3. XM_014903255.2 → XP_014758741.1  zinc finger CCCH domain-containing protein 65 isoform X3

    UniProtKB/TrEMBL
    A0A0Q3HTQ2
    Conserved Domains (1) summary
    pfam00642
    Location:436 → 462
    zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Nucleotide Protein Strain
Heading Accession and Version

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