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LOC100833346 WRKY transcription factor WRKY51 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100833346, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100833346
Gene description
WRKY transcription factor WRKY51
Locus tag
BRADI_5g20700v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100833346 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (23641412..23642792, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (23588311..23589700, complement)

Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein At3g28410 Neighboring gene uncharacterized LOC100830894 Neighboring gene DNA-directed RNA polymerases II, IV and V subunit 8B Neighboring gene putative xyloglucan endotransglucosylase/hydrolase protein 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WRKY transcription factor WRKY51
Names
probable WRKY transcription factor 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    23641412..23642792 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003580399.4 → XP_003580447.1  WRKY transcription factor WRKY51

    UniProtKB/TrEMBL
    I1J1F7
    Conserved Domains (2) summary
    smart00774
    Location:222 → 280
    WRKY; DNA binding domain
    pfam10533
    Location:184 → 220
    Plant_zn_clust; Plant zinc cluster domain
Nucleotide Protein Strain
Heading Accession and Version

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