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LOC100833323 homeobox protein knotted-1-like 4 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100833323, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100833323
Gene description
homeobox protein knotted-1-like 4
Locus tag
BRADI_1g12677v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100833323 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (9559532..9561594)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (9559574..9561420)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene DUF21 domain-containing protein At2g14520 Neighboring gene CSC1-like protein RXW8 Neighboring gene homeobox protein knotted-1-like 4 Neighboring gene pentatricopeptide repeat-containing protein At2g27610-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox protein knotted-1-like 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    9559532..9561594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014900327.2 → XP_014755813.1  homeobox protein knotted-1-like 4

    UniProtKB/TrEMBL
    I1GPN4
    Conserved Domains (3) summary
    pfam03790
    Location:5 → 43
    KNOX1; KNOX1 domain
    pfam03791
    Location:58 → 100
    KNOX2; KNOX2 domain
    pfam05920
    Location:171 → 211
    Homeobox_KN; Homeobox KN domain
Nucleotide Protein Strain
Heading Accession and Version

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