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LOC100830591 transcription factor E2FA [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100830591, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100830591
Gene description
transcription factor E2FA
Locus tag
BRADI_5g09640v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100830591 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 5 NC_016135.3 (13098362..13103624, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 5 NC_016135.2 (13043005..13048183, complement)

Chromosome 5 - NC_016135.3Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein Neighboring gene non-specific lipid transfer protein GPI-anchored 1 Neighboring gene uncharacterized LOC100830285 Neighboring gene 2-Cys peroxiredoxin BAS1, chloroplastic Neighboring gene protein SMAX1-LIKE 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor E2FA

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016135.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    13098362..13103624 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003581169.4 → XP_003581217.1  transcription factor E2FA isoform X1

    UniProtKB/TrEMBL
    A0A0Q3E402, A0A2K2CG90
    Conserved Domains (3) summary
    cd14660
    Location:221 → 256
    E2F_DD; coiled coil [structural motif]
    pfam02319
    Location:148 → 211
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam16421
    Location:226 → 326
    E2F_CC-MB; E2F transcription factor CC-MB domain

  2. XM_010241586.3 → XP_010239888.1  transcription factor E2FA isoform X2

    UniProtKB/TrEMBL
    A0A0Q3I8W8, A0A2K2CG91
    Conserved Domains (3) summary
    cd14660
    Location:221 → 256
    E2F_DD; coiled coil [structural motif]
    pfam02319
    Location:148 → 211
    E2F_TDP; E2F/DP family winged-helix DNA-binding domain
    pfam16421
    Location:226 → 326
    E2F_CC-MB; E2F transcription factor CC-MB domain
Nucleotide Protein Strain
Heading Accession and Version

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