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LOC100829571 chitin-inducible gibberellin-responsive protein 1 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 100829571, updated on 9-Nov-2023

Summary

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Gene symbol
LOC100829571
Gene description
chitin-inducible gibberellin-responsive protein 1
Locus tag
BRADI_1g25370v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC100829571 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (20652837..20657589, complement)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (20653564..20658316, complement)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene isopentenyl-diphosphate Delta-isomerase I Neighboring gene microRNA MIR5067 Neighboring gene pentatricopeptide repeat-containing protein At4g18975, chloroplastic Neighboring gene formin-like protein 11 Neighboring gene probable histone H2A.2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitin-inducible gibberellin-responsive protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    20652837..20657589 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003562912.3 → XP_003562960.1  chitin-inducible gibberellin-responsive protein 1

    UniProtKB/TrEMBL
    A0A0Q3JUU0, I1GTP0
    Conserved Domains (1) summary
    pfam03514
    Location:202 → 570
    GRAS; GRAS domain family
Nucleotide Protein Strain
Heading Accession and Version

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